PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.377700.1
Common NameCsa_7G000520, LOC101216907
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 457aa    MW: 49942.8 Da    PI: 6.1231
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.377700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.85.1e-10259306455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  Cucsa.377700.1 259 SHSLAERARREKISERMKYLQDLVPGC----NKITGKAGMLDEIINYVQSLQ 306
                     8**************************....999*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474599.16E-17253324IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.30E-10253310No hitNo description
PROSITE profilePS5088815.58255305IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.0E-17255322IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-7259306IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.3E-9261311IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0009637Biological Processresponse to blue light
GO:0009911Biological Processpositive regulation of flower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 457 aa     Download sequence    Send to blast
MMNRALPEML HCLNSTGNCS DTLSVLERQR ARLKWQQDML FQQPLNQSCF SRADYGGGFP  60
PPVSVPADHL TGFPGYMSGG GGVGGGLSHV EMVMGAVKPD PGLEDGWSEM GKFDPSLLLN  120
PTACELNSSL SRTSSCLPVV APTVAEKMGS MAGRESFKKR KAEKAHNTTT TANTNNNKVT  180
VEEDENNNSK EKRIKTSSEG ELSKTTDQNG TKNNSTITTT TNNNRETSAD TSKENSKASE  240
VQKPDYIHVR ARRGQATDSH SLAERARREK ISERMKYLQD LVPGCNKITG KAGMLDEIIN  300
YVQSLQRQVE FLSMKLAAVN PRLDFNVDDL FNKEVFPPSC TAANFPSVGG MSSEMTDPSS  360
YLQFNPNNQQ MDSCCGLEMG INTSHVALRR TISAPVSFPE NFLDSSCLTQ FQPSSGWDVD  420
LQNMYNVGFD QGRSSNAFSS HPYTGSIEAG NIKMEM*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6817980.0LN681798.1 Cucumis melo genomic scaffold, anchoredscaffold00019.
GenBankLN7132550.0LN713255.1 Cucumis melo genomic chromosome, chr_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011658545.10.0PREDICTED: transcription factor bHLH63-like
TrEMBLA0A0A0K0C80.0A0A0A0K0C8_CUCSA; Uncharacterized protein
STRINGVIT_03s0038g04760.t011e-139(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF36183463
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34530.13e-59cryptochrome-interacting basic-helix-loop-helix 1
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]